species:   Rhsol
pid:       PID0572
parent:    Rhi-milR-166
paralog:   
locus:     KB317740.1:94956-95053
matures:   ['UUGGCAUCAGAAGUUGUAGAAA', 'GAUGCAGCUUGUUAUGUUGGAUUUAACA']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317740.1:94956-95053

0 out of bounds
30 alignments
29 proper strand
26 stranded perfect matches

         *******************************                        *************************         
UGUCAAGUGCAUGAUGCAGCUUGUUAUGUUGGAUUUAACAGGUUGGUCACAGAUGUGACCAGCCAGUUGGCAUCAGAAGUUGUAGAAACAGAUUGUUG
...(((........((((((((.(.((((......((((.((((((((((....)))))))))).)))))))).).))))))))........)))...
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAA---------- l=22 a=2 c
------------GAUGCAGCUUGUUAUGUUGGAUUUAACA---------------------------------------------------------- l=28 a=0 c*
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAAC--------- l=23 a=6 ma
-----------UGAUGCAGCUUGUUAUGUUGGAUUUAACA---------------------------------------------------------- l=29 a=0 ma*

--------------------------------------------------------------CCAGUUGGCAUCAGAAGUUGUAG------------- l=23 a=5 
--------------------------------------------------------------CCAGUUGGCAUCAGAAGUUGUAGu------------ l=24 a=1 
----------------------------------------------------------------AGUUGGCAUCAGAAGUUGUAG------------- l=21 a=1 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAA---------- l=22 a=2 (c)
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAAC--------- l=23 a=6 (ma)
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAACA-------- l=24 a=2 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAACAG------- l=25 a=4 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAcACAG------- l=25 a=1 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAACAGA------ l=26 a=2 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAACAGu------ l=26 a=1 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAAC--------- l=22 a=1 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAACAG------- l=24 a=3 

mb-01011
ax-1001011
ku-01
ss-101111101000
fn-111
